Package: salso 0.3.73
salso: Search Algorithms and Loss Functions for Bayesian Clustering
The SALSO algorithm is an efficient randomized greedy search method to find a point estimate for a random partition based on a loss function and posterior Monte Carlo samples. The algorithm is implemented for many loss functions, including the Binder loss and a generalization of the variation of information loss, both of which allow for unequal weights on the two types of clustering mistakes. Efficient implementations are also provided for Monte Carlo estimation of the posterior expected loss of a given clustering estimate. See Dahl, Johnson, Müller (2022) <doi:10.1080/10618600.2022.2069779>.
Authors:
salso_0.3.73.tar.gz
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salso_0.3.73.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
salso/json (API)
NEWS
| # Install 'salso' in R: |
| install.packages('salso', repos = c('https://dbdahl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dbdahl/salso/issues
- iris.clusterings - Clusterings of the Iris Data
- synthetic - Synthetic Dataset for CHIPS Demo
Last updated from:84e62fe308 (on pkg/salso). Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 164 | ||
| linux-devel-x86_64 | OK | 165 | ||
| source / vignettes | OK | 185 | ||
| linux-release-arm64 | OK | 156 | ||
| linux-release-x86_64 | OK | 162 | ||
| macos-release-arm64 | OK | 202 | ||
| macos-release-x86_64 | OK | 336 | ||
| macos-oldrel-arm64 | OK | 192 | ||
| macos-oldrel-x86_64 | OK | 354 | ||
| windows-devel | OK | 243 | ||
| windows-release | OK | 136 | ||
| windows-oldrel | OK | 146 | ||
| wasm-release | OK | 129 |
Exports:ARIbellbindercanonicalize_cluster_labelschipsdlsoenumerate.partitionsenumerate.permutationsIDlbellNIDNVIomARIomARI.approxpartition.losspsmRIsalsothresholdVIVI.lb
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute the Bell Number | bell lbell |
| Canonicalize Cluster Labels | canonicalize_cluster_labels |
| CHIPS Partition Greedy Search | chips |
| Latent Structure Optimization Based on Draws | dlso |
| Enumerate Partitions of a Set | enumerate.partitions |
| Enumerate Permutations of Items | enumerate.permutations |
| Clusterings of the Iris Data | iris.clusterings |
| Compute Partition Loss or the Expectation of Partition Loss | ARI binder ID NID NVI omARI omARI.approx partition.loss RI VI VI.lb |
| Heatmap, Multidimensional Scaling, Pairs, and Dendrogram Plotting for Partition Estimation | plot.salso.summary |
| Compute an Adjacency or Pairwise Similarity Matrix | psm |
| SALSO Greedy Search | salso |
| Summary of Partitions Estimated Using Posterior Expected Loss | summary.salso.estimate |
| Synthetic Dataset for CHIPS Demo | synthetic |
| Threshold CHIPS Output | threshold |
